Tag Archive for: QCMD

Scientific publication

Demonstrating a Quartz Crystal Microbalance with Dissipation (QCMD) to Enhance the Monitoring and Mechanistic Understanding of Iron Carbonate Crystalline Films

Authors: Igor Efimov, Eftychios Hadjittofis, Mustafa M. Alsalem, and Kyra L. Sedransk Campbell

Journal: Langmuir

Abstract:

This paper reports the real time monitoring of siderite deposition, on both Au- and Fe-coated surfaces, using the changes in frequency and dissipation of quartz crystal microbalance with dissipation (QCMD). In an iron chloride solution saturated with carbon dioxide, buffered with sodium bicarbonate to pH 6.8, roughly spherical particles of siderite formed within 15 min, which subsequently deposited on the QCMD crystal surface. Imaging of the surface showed a layer formed from particles ca. < 0.5 μm in diameter. Larger particles are clearly deposited on top of the lower layer; these larger particles are >1 μm in diameter. Monitoring of the frequency clearly differentiates the formation of the lower layer from the larger crystals deposited on top at later times. The elastic moduli calculated from QCMD data showed a progressive dissipation increase; the modeling of the solid–liquid interface using a flat approximation resulted in a poor estimation of elastic and storage moduli. Rather, the impedance modeled as a viscoelastic layer in contact with a semi-infinite liquid, where a random bumpy surface with a Gaussian correlator is used, is much more accurate in determining the elastic and storage moduli as losses from the uneven interface are considered. A further step considers that the film is in fact a composite consisting of hard spherical particles of siderite with water in the vacant spaces. This is treated by considering the individual contributions of the phases to the losses measured, thereby further improving the accuracy of the description of the film and the QCMD data. Collectively, this work presents a new framework for the use of QCMD, paired with traditional approaches, to enhance the understanding of crystal deposition and film formation as well as quantify the often evolving mechanical properties.

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Scientific publication

A low-cost microfluidic flow stabilizer for enhancing QCM measurement stability in in-liquid bio-applications

Authors: Mohamed Adel, Ahmed Allam, Ashraf E Sayour, Hani F Ragai, Shinjiro Umezu and Ahmed M R Fath El-Bab

Journal: Eng. Res. Express

Abstract

Quartz crystal microbalance (QCM) is a powerful sensing technique widely used in various applications, including biosensing, chemical analysis, and material science. In in-liquid applications, QCM measurements are susceptible to fluctuations in fluid flow rate, which can introduce unwanted noise and compromise the accuracy and reliability of the measurements. In this work, we present an approach to enhance the stability of QCM measurements by utilizing a microfluidic flow stabilizer. The flow stabilizer is designed to minimize flow rate fluctuations, thereby reducing the impact of hydrodynamic effects on the QCM frequency response. We employ a comprehensive methodology that combines computational fluid dynamics (CFD) simulations using ANSYS Fluent software, microfabrication, and experimental testing to evaluate the effectiveness of the flow stabilizer in mitigating flow-induced fluctuations and improving the reliability of QCM measurements. For fabrication, we use direct engraving with a CO2 laser beam on polymethyl methacrylate (PMMA) material to drastically reduce the fabrication cost (to <40 cents) and fabrication time (to 35 min) of the microfluidic chip. Two different designs have been presented and tested: one with a single air reservoir and the other with two reservoirs. Two distinct setups employing a peristaltic pump and a micropump, along with a high fundamental frequency of 50 MHz QCM sensor, were utilized for comprehensive testing in this study. The experimental results demonstrated that the first and second designs of the microfluidic flow stabilizer effectively reduced the fluctuation amplitude in QCM measurements from 100% (input) to 23% and 19% (output), respectively.

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Scientific publication

Real-time monitoring of dephosphorylation process of phosphopeptide and rapid assay of PTP1B activity based on a 100 MHz QCM biosensing platform

Authors: Shuping Liu, Qingqing Zhang, Xiaohua Zhang, Cuicui Du, Jinhua Chen, Shihui Si

Journal: Talanta

Abstract

The misregulation of protein phosphatases is a key factor in the development of many human diseases, notably cancers. Here, based on a 100 MHz quartz crystal microbalance (QCM) biosensing platform, the dephosphorylation process of phosphopeptide (P-peptide) caused by protein tyrosine phosphatase 1B (PTP1B) was monitored in real time for the first time and PTP1B activity was assayed rapidly and sensitively. The QCM chip, coated with a gold (Au) film, was used to immobilized thiol-labeled single-stranded 5′-phosphate-DNAs (P-DNA) through Au–S bond. The P-peptide, specific to PTP1B, was then connected to the P-DNA via chelation between Zr4+ and phosphate groups. When PTP1B was injected into the QCM flow cell where the P-peptide/Zr4+/MCH/P-DNA/Au chip was placed, the P-peptide was dephosphorylated and released from the Au chip surface, resulting in an increase in the frequency of the QCM Au chip. This allowed the real-time monitoring of the P-peptide dephosphorylation process and sensitive detection of PTP1B activity within 6 min with a linear detection range of 0.01–100 pM and a detection limit of 0.008 pM. In addition, the maximum inhibitory ratios of inhibitors were evaluated using this proposed 100 MHz QCM biosensor. The developed 100 MHz QCM biosensing platform shows immense potential for early diagnosis of diseases related to protein phosphatases and the development of drugs targeting protein phosphatases.

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Publication on AWSensors technology

Acoustic detection of a mutation-specific Ligase Chain Reaction based on liposome amplification

Authors: Nikoletta Naoumi, Monica Araya-Farias, Maria Megariti, Lucile Alexandre, George Papadakis, Stephanie Descroix, and Electra Gizeli

Journal: Analyst

Abstract

Single nucleotide variants (SNVs) play a crucial role in understanding genetic diseases, cancer development, and personalized medicine. However, existing ligase-based amplification and detection techniques, such as Rolling Circle Amplification and Ligase Detection Reaction, suffer from low efficiency and difficulties in product detection. To address these limitations, we propose a novel approach that combines Ligase Chain Reaction (LCR) with acoustic detection using highly dissipative liposomes. In our study, we are using LCR combined with biotin- and cholesterol-tagged primers to produce amplicons also modified at each end with a biotin and cholesterol molecule. We then apply the LCR mix without any purification directly on a neutravidin modified QCM device Au-surface, where the produced amplicons can bind specifically through the biotin end. To improve sensitivity, we finally introduce liposomes as signal enhancers. For demonstration, we used the detection of the BRAF V600E point mutation versus the wild-type allele, achieving an impressive detection limit of 220 aM of the mutant target in the presence of the same amount of the wild type. Finally, we combined the assay with a microfluidic fluidized bed DNA extraction technology, offering the potential for semi-automated detection of SNVs in patients’ crude samples. Overall, our LCR/acoustic method outperforms other LCR-based approaches and surface ligation biosensing techniques in terms of detection efficiency and time. It effectively overcomes challenges related to DNA detection, making it applicable in diverse fields, including genetic disease and pathogen detection.

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Publication on AWSensors technology

Quartz crystal microbalance in soft and biological interfaces

Authors: Ilya Reviakine

Journal: Biointephases (2024)

 

Abstract


Applications of quartz crystal microbalance with dissipation to studying soft and biological interfaces are reviewed. The focus is primarily on data analysis through viscoelastic modeling and a model-free approach focusing on the acoustic ratio. Current challenges and future research and development directions are discussed.

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QCMD Data Analysis with PyQTM

AWsensors Technology Note, video, and executable QCMD Data Analysis with PyQTM.

Publication on AWSensors technology

C60-based Multivalent Glycoporphyrins Inhibit SARS-CoV-2 Specific Interaction with the DC-SIGN Transmembrane Receptor

Authors: Jennifer Patino-Alonso, Justo Cabrera-González, Javier Merino, Gema Nieto-Ortiz, Fátima Lasala, Jouma Katati, Carlos H. Bezerra da Cruz, Ajay K. Monnappa, Pablo Mateos-Gil, Ángeles Canales, Iván López-Montero, Beatriz M. Illescas, Rafael Delgado, and Nazario Martín

Journal: Small (2023)

 

Abstract

Since WHO has declared the COVID-19 outbreak a global pandemic, nearly seven million deaths have been reported. This efficient spread of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) is facilitated by the ability of the spike glycoprotein to bind multiple cell membrane receptors. Although ACE2 is identified as the main receptor for SARS-CoV-2, other receptors could play a role in viral entry. Among others, C-type lectins such as DC-SIGN are identified as efficient trans-receptor for SARS-CoV-2 infection, so the use of glycomimetics to inhibit the infection through the DC-SIGN blockade is an encouraging approach. In this regard, multivalent nanostructures based on glycosylated [60]fullerenes linked to a central porphyrin scaffold have been designed and tested against DC-SIGN-mediated SARS-CoV-2 infection. First results show an outstanding inhibition of the trans-infection up to 90%. In addition, a deeper understanding of nanostructure-receptor binding is achieved through microscopy techniques, high-resolution NMR experiments, Quartz Crystal Microbalance experiments, and molecular dynamic simulations.

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Publication on AWSensors technology

Comparison of Thin-Film Capacitor Geometries for the Detection of Volatile Organic Compounds Using a ZIF-8 Affinity Layer

Authors: Aleksander Matavž, Margot F. K. Verstreken, Jorid Smets, Max L. Tietze, and Rob Ameloot

JournalACS Sensors (2023)

 

Abstract

Their chemical diversity, uniform pore sizes, and large internal surface areas make metal–organic frameworks (MOFs) highly suitable for volatile organic compound (VOC) adsorption. This work compares two geometries of capacitive VOC sensors that use the MOF material ZIF-8 as an affinity layer. When using a permeable top electrode (thickness < 25 nm), the metal–insulator–metal (MIM) sandwich configuration exhibits superior sensitivity, an improved detection limit, and a smaller footprint than the conventional interdigitated electrode layout. Moreover, the transduction of VOC adsorption in ZIF-8 via MIM capacitors is more sensitive to polar VOCs and provides better selectivity at high loadings than gravimetric and optical transductions.

 

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Publication on AWSensors technology

Fouling of Reverse Osmosis Membrane with Effluent Organic Matter: Componential Role of Hydrophobicity

Authors: Noa Stein, Revital Sharon-Gojman, Meagan S. Mauter, Roy Bernstein and Moshe Herzberg

JournalACS ES&T Water (2023)

 

Abstract

Organic matter dissolved in tertiary effluents (effluent organic matter, EfOM) is the predominant organic membrane foulant in tertiary wastewater reverse osmosis (RO) desalination, ultimately causing biofouling. The interrelated effects of EfOM fractions of different hydrophobicity and polarity on membrane performance were studied by (i) examining each fraction’s overall effect on membrane permeability; (ii) analyzing the intrinsic hydraulic resistance induced by each fraction; (iii) studying their adsorption on the active layer of an RO membrane using a quartz crystal microbalance with dissipation monitoring (QCM-D); (iv) assessing their “dry” molecular mass when adsorbed on polyamide using localized surface plasmon resonance (LSPR) sensing; (v) analyzing their hydrodynamic radii by dynamic light scattering (DLS); and (vi) characterization using excitation–emission matrix (EEM) analysis and parallel-factor (PARAFAC) modeling. Hydrophobic and transphilic neutral fractions (containing ∼12.5% total organic carbon) have the greatest effect on membrane flux reduction and the highest hydraulic resistance and adhere most strongly to polyamide surfaces, resulting in the highest adsorbed “dry” mass. Therefore, in terms of their effect on RO permeate flux reduction, these fractions are the most detrimental in the EfOM mix. EEM analysis and associated PARAFAC modeling indicate that the main components causing this effect are mixtures of protein-like compounds, together with humic-like substances. Novel LSPR-based analysis elucidated the role of the fractions most detrimental to membrane permeability through measurement of dry mass surface concentration on a polyamide mimetic sensor. This study provides valuable insights into the roles of different EfOM fractions in RO membrane fouling and enhances our understanding of fouling during tertiary wastewater desalination.

Fouling of Reverse Osmosis Membrane with Effluent Organic Matter: Componential Role of Hydrophobicity

 

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Publication on AWSensors technology

Tuning the water interactions of cellulose nanofibril hydrogels using willow bark extract

Authors: Ngoc Huynh, Juan José Valle-Delgado, Wenwen Fang, Suvi Arola, Monika Österberg

Journal: Carbohydrate Polymers (2023)

 

Abstract

Cellulose nanofibrils (CNFs) are increasingly used as precursors for foams, films and composites, where water interactions are of great importance. In this study, we used willow bark extract (WBE), an underrated natural source of bioactive phenolic compounds, as a plant-based modifier for CNF hydrogels, without compromising their mechanical properties. We found that the introduction of WBE into both native, mechanically fibrillated CNFs and TEMPO-oxidized CNFs increased considerably the storage modulus of the hydrogels and reduced their swelling ratio in water up to 5–7 times. A detailed chemical analysis revealed that WBE is composed of several phenolic compounds in addition to potassium salts. Whereas the salt ions reduced the repulsion between fibrils and created denser CNF networks, the phenolic compounds – which adsorbed readily on the cellulose surfaces – played an important role in assisting the flowability of the hydrogels at high shear strains by reducing the flocculation tendency, often observed in pure and salt-containing CNFs, and contributed to the structural integrity of the CNF network in aqueous environment. Surprisingly, the willow bark extract exhibited hemolysis activity, which highlights the importance of more thorough investigations of biocompatibility of natural materials. WBE shows great potential for managing the water interactions of CNF-based products.

 

Cellulose nanofibrils (CNFs) are increasingly used as precursors for foams, films and composites, where water interactions are of great importance. In this study, we used willow bark extract (WBE), an underrated natural source of bioactive phenolic compounds, as a plant-based modifier for CNF hydrogels, without compromising their mechanical properties. We found that the introduction of WBE into both native, mechanically fibrillated CNFs and TEMPO-oxidized CNFs increased considerably the storage modulus of the hydrogels and reduced their swelling ratio in water up to 5–7 times. A detailed chemical analysis revealed that WBE is composed of several phenolic compounds in addition to potassium salts. Whereas the salt ions reduced the repulsion between fibrils and created denser CNF networks, the phenolic compounds - which adsorbed readily on the cellulose surfaces - played an important role in assisting the flowability of the hydrogels at high shear strains by reducing the flocculation tendency, often observed in pure and salt-containing CNFs, and contributed to the structural integrity of the CNF network in aqueous environment. Surprisingly, the willow bark extract exhibited hemolysis activity, which highlights the importance of more thorough investigations of biocompatibility of natural materials. WBE shows great potential for managing the water interactions of CNF-based products.

 

You may read the full paper here.